Vaccine and Infectious Disease Division

2012 VIDD Publications

1. Abu-Raddad LJ, Barnabas RV, Janes H, Weiss HA, Kublin JG, Longini IM, et al. Have the explosive HIV epidemics in sub-Saharan Africa been driven by higher community viral load? AIDS (London, England). 2012.
http://www.ncbi.nlm.nih.gov/pubmed/23196933?otool=fhcrclib

2. Achenbach CJ, Harrington RD, Dhanireddy S, Crane HM, Casper C, Kitahata MM. Paradoxical Immune Reconstitution Inflammatory Syndrome in HIV-Infected Patients Treated With Combination Antiretroviral Therapy After AIDS-Defining Opportunistic Infection. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 2012;54(3):424-33.   
http://www.ncbi.nlm.nih.gov/pubmed/22095568?otool=fhcrclib

3. Achenbach CJ, Harrington RD, Dhanireddy S, Crane HM, Casper C, Kitahata MM. Reply to letang et Al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 2012;55(1):158-9.
http://www.ncbi.nlm.nih.gov/pubmed/22491343?otool=fhcrclib

4. Aizire J, Fowler MG, Wang J, Shetty AK, Stranix-Chibanda L, Kamateeka M, et al. Extended prophylaxis with nevirapine and cotrimoxazole among HIV-exposed uninfected infants is well tolerated. AIDS (London, England). 2012;26(3):325-33.   
http://www.ncbi.nlm.nih.gov/pubmed/22112598?otool=fhcrclib

5. Andersen-Nissen E, Heit A, McElrath MJ. Profiling immunity to HIV vaccines with systems biology. Current opinion in HIV and AIDS. 2012;7(1):32-7.   
http://www.ncbi.nlm.nih.gov/pubmed/22134340?otool=fhcrclib

6. Baden LR, Bensinger WI, Angarone M, Casper C, Dubberke ER, Freifeld AG, et al. Prevention and treatment of cancer-related infections. J Natl Compr Canc Netw. 2012;10(11):1412-45.
http://www.ncbi.nlm.nih.gov/pubmed/23138169?otool=fhcrclib

7. Baeten JM, Donnell D, Ndase P, Mugo NR, Campbell JD, Wangisi J, et al. Antiretroviral prophylaxis for HIV prevention in heterosexual men and women. N Engl J Med. 2012;367(5):399-410.
http://www.ncbi.nlm.nih.gov/pubmed/22784037?otool=fhcrclib

8. Baeten JM, Reid SE, Delany-Moretlwe S, Hughes JP, Wang RS, Wilcox E, et al. Clinical and virologic response to episodic acyclovir for genital ulcers among HIV-1 seronegative, herpes simplex virus type 2 seropositive African women: a randomized, placebo-controlled trial. Sexually transmitted diseases. 2012;39(1):21-4.
http://www.ncbi.nlm.nih.gov/pubmed/22183840?otool=fhcrclib

9. Balkus JE, Jaoko W, Mandaliya K, Richardson BA, Masese L, Gitau R, et al. The posttrial effect of oral periodic presumptive treatment for vaginal infections on the incidence of bacterial vaginosis and Lactobacillus colonization. Sexually transmitted diseases. 2012;39(5):361-5.
http://www.ncbi.nlm.nih.gov/pubmed/22504600?otool=fhcrclib

10. Balkus JE, Mitchell C, Agnew K, Liu C, Fiedler T, Cohn SE, et al. Detection of hydrogen peroxide-producing Lactobacillus species in the vagina: a comparison of culture and quantitative PCR among HIV-1 seropositive women. BMC Infect Dis. 2012;12:188.
http://www.ncbi.nlm.nih.gov/pubmed/22889380?otool=fhcrclib

11. Bashashati A, Johnson NA, Khodabakhshi AH, Whiteside MD, Zare H, Scott DW, et al. B cells with high side scatter parameter by flow cytometry correlate with inferior survival in diffuse large B-cell lymphoma. Am J Clin Pathol. 2012;137(5):805-14.
http://www.ncbi.nlm.nih.gov/pubmed/22523221?otool=fhcrclib

12. Belshe RB, Leone PA, Bernstein DI, Wald A, Levin MJ, Stapleton JT, et al. Efficacy results of a trial of a herpes simplex vaccine. N Engl J Med. 2012;366(1):34-43.
http://www.ncbi.nlm.nih.gov/pubmed/22216840?otool=fhcrclib

13. Benlahrech A, Meiser A, Herath S, Papagatsias T, Athanasopoulos T, Li F, et al. Fragmentation of SIV-gag Vaccine Induces Broader T Cell Responses. PloS one. 2012;7(10):e48038.
http://www.ncbi.nlm.nih.gov/pubmed/23118924?otool=fhcrclib

14. Blish CA, Dogan OC, Jaoko W, McClelland RS, Mandaliya K, Odem-Davis KS, et al. Cellular immune responses and susceptibility to HIV-1 superinfection: a case-control study. AIDS (London, England). 2012;26(5):643-6.   
http://www.ncbi.nlm.nih.gov/pubmed/22210637?otool=fhcrclib

15. Blish CA, McClelland RS, Richardson BA, Jaoko W, Mandaliya K, Baeten JM, et al. Genital Inflammation Predicts HIV-1 Shedding Independent of Plasma Viral Load and Systemic Inflammation. Journal of acquired immune deficiency syndromes (1999). 2012;61(4):436-40.
http://www.ncbi.nlm.nih.gov/pubmed/22878424?otool=fhcrclib

16. Boeckh M. Neutropenic diet - good practice or myth? Biology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation. 2012;18(9):1318-9.
http://www.ncbi.nlm.nih.gov/pubmed/22796341?otool=fhcrclib

17. Bonsignori M, Pollara J, Moody MA, Alpert MD, Chen X, Hwang K-K, et al. Antibody-Dependent Cellular Cytotoxicity-Mediating Antibodies from an HIV-1 Vaccine Efficacy Trial Target Multiple Epitopes and Preferentially Use the VH1 Gene Family. Journal of virology. 2012;86(21):11521-32.
http://www.ncbi.nlm.nih.gov/pubmed/22896626?otool=fhcrclib

18. Bosch M, Dhadda M, Hoegh-Petersen M, Liu Y, Hagel LM, Podgorny P, et al. Immune reconstitution after anti-thymocyte globulin-conditioned hematopoietic cell transplantation. Cytotherapy. 2012;14(10):1258-75.
http://www.ncbi.nlm.nih.gov/pubmed/22985195?otool=fhcrclib

19. Brockman MA, Chopera DR, Olvera A, Brumme CJ, Sela J, Markle TJ, et al. Uncommon Pathways of Immune Escape Attenuate HIV-1 Integrase Replication Capacity. Journal of virology. 2012;86(12):6913-23.
http://www.ncbi.nlm.nih.gov/pubmed/22496233?otool=fhcrclib

20. Burns JL, Emerson J, Kuypers J, Campbell AP, Gibson RL, McNamara S, et al. Respiratory viruses in children with cystic fibrosis: viral detection and clinical findings. Influenza Other Respi Viruses. 2012;6(3):218-23.
http://www.ncbi.nlm.nih.gov/pubmed/21955319?otool=fhcrclib

21. Burton DR, Ahmed R, Barouch DH, Butera ST, Crotty S, Godzik A, et al. A Blueprint for HIV Vaccine Discovery. Cell Host Microbe. 2012;12(4):396-407.
http://www.ncbi.nlm.nih.gov/pubmed/23084910?otool=fhcrclib

22. Caron F, Doucet A, Gottardo R. On-line changepoint detection and parameter estimation with application to genomic data. Statistics and Computing. 2012;22(2):579 - 95.

23. Chao DL, Bloom JD, Kochin BF, Antia R, Longini IM. The global spread of drug-resistant influenza. Journal of the Royal Society, Interface / the Royal Society. 2012;9(69):648-56.   
http://www.ncbi.nlm.nih.gov/pubmed/21865253?otool=fhcrclib

24. Chao DL, Halstead SB, Halloran ME, Longini IM. Controlling dengue with vaccines in Thailand. PLoS Negl Trop Dis. 2012;6(10):e1876.
http://www.ncbi.nlm.nih.gov/pubmed/23145197?otool=fhcrclib

25. Chemaitelly H, Cremin I, Shelton J, Hallett TB, Abu-Raddad LJ. Distinct HIV discordancy patterns by epidemic size in stable sexual partnerships in sub-Saharan Africa. Sexually transmitted infections. 2012;88(1):51-7.
http://www.ncbi.nlm.nih.gov/pubmed/22250180?otool=fhcrclib

26. Chen WH, Winokur PL, Edwards KM, Jackson LA, Wald A, Walter EB, et al. Phase 2 assessment of the safety and immunogenicity of two inactivated pandemic monovalent H1N1 vaccines in adults as a component of the U.S. pandemic preparedness plan in 2009. Vaccine. 2012;30(28):4240-8.
http://www.ncbi.nlm.nih.gov/pubmed/22537984?otool=fhcrclib

27. Chen YQ, Masse B, Wang L, Ou S-S, Li X, Donnell D, et al. Statistical considerations for the HPTN 052 Study to evaluate the effectiveness of early versus delayed antiretroviral strategies to prevent the sexual transmission of HIV-1 in serodiscordant couples. Contemp Clin Trials. 2012;33(6):1280-6.   
http://www.ncbi.nlm.nih.gov/pubmed/22813645?otool=fhcrclib

28. Cheng C, Wang L, Gall JGD, Nason M, Schwartz RM, McElrath MJ, et al. Decreased pre-existing Ad5 capsid and Ad35 neutralizing antibodies increase HIV-1 infection risk in the Step trial independent of vaccination. PloS one. 2012;7(4):e33969.
http://www.ncbi.nlm.nih.gov/pubmed/22496775?otool=fhcrclib

29. Chirenje ZM, Mâsse BR, Maslankowski LA, Ramjee G, Coletti AS, Tembo TN, et al. Utility of colposcopy in a phase 2 portion of a microbicide clinical trial of BufferGel and 0.5% PRO 2000 Gel. J Int AIDS Soc. 2012;15(2):17376.
http://www.ncbi.nlm.nih.gov/pubmed/22944480?otool=fhcrclib

30. Choi S-M, Xie H, Campbell AP, Kuypers J, Leisenring W, Boudreault AA, et al. Influenza Viral RNA Detection in Blood as a Marker to Predict Disease Severity in Hematopoietic Cell Transplant Recipients. The Journal of infectious diseases. 2012;206(12):1872-7.   
http://www.ncbi.nlm.nih.gov/pubmed/23033148?otool=fhcrclib

31. Chu H, Lofgren ET, Halloran ME, Kuan PF, Hudgens M, Cole SR. Performance of rapid influenza H1N1 diagnostic tests: a meta-analysis. Influenza Other Respi Viruses. 2012;6(2):80-6.   
http://www.ncbi.nlm.nih.gov/pubmed/21883964?otool=fhcrclib

32. Cohen CR, Lingappa JR, Baeten JM, Ngayo MO, Spiegel CA, Hong T, et al. Bacterial Vaginosis Associated with Increased Risk of Female-to-Male HIV-1 Transmission: A Prospective Cohort Analysis among African Couples. PLoS Med. 2012;9(6):e1001251.
http://www.ncbi.nlm.nih.gov/pubmed/22745608?otool=fhcrclib

33. Cook L, Diem K, Kim W, Scott JD, Jerome KR. Allele-Specific PCR for Determination of IL28B Genotype. J Clin Microbiol. 2012;50(12):4144-6.
http://www.ncbi.nlm.nih.gov/pubmed/23052312?otool=fhcrclib

34. Coovadia HM, Brown ER, Fowler MG, Chipato T, Moodley D, Manji K, et al. Efficacy and safety of an extended nevirapine regimen in infant children of breastfeeding mothers with HIV-1 infection for prevention of postnatal HIV-1 transmission (HPTN 046): a randomised, double-blind, placebo-controlled trial. Lancet. 2012;379(9812):221-8.   
http://www.ncbi.nlm.nih.gov/pubmed/22196945?otool=fhcrclib

35. Cousins MM, Ou S-S, Wawer MJ, Munshaw S, Swan D, Magaret CA, et al. Comparison of a High-Resolution Melting Assay to Next-Generation Sequencing for Analysis of HIV Diversity. J Clin Microbiol. 2012;50(9):3054-9.
http://www.ncbi.nlm.nih.gov/pubmed/22785188?otool=fhcrclib

36. Dai JY, Gilbert PB, Mâsse BR. Partially Hidden Markov Model for Time-Varying Principal Stratification in HIV Prevention Trials. Journal of the American Statistical Association. 2012;107(497):52 - 65.

37. Dai JY, Hughes JP. A unified procedure for meta-analytic evaluation of surrogate end points in randomized clinical trials. Biostatistics (Oxford, England). 2012;13(4):609-24.
http://www.ncbi.nlm.nih.gov/pubmed/22394448?otool=fhcrclib

38. Dai JY, Logsdon BA, Huang Y, Hsu L, Reiner AP, Prentice RL, et al. Simultaneously testing for marginal genetic association and gene-environment interaction. Am J Epidemiol. 2012;176(2):164-73.
http://www.ncbi.nlm.nih.gov/pubmed/22771729?otool=fhcrclib

39. de Bruyn G, Magaret A, Baeten JM, Lingappa J, Ndase P, Celum C, et al. Mortality in members of HIV-1 serodiscordant couples in Africa and implications for antiretroviral therapy initiation: Results of analyses from a multicenter randomized trial. BMC Infect Dis. 2012;12(1):277.
http://www.ncbi.nlm.nih.gov/pubmed/23130818?otool=fhcrclib

40. De Rosa SC, Carter DK, McElrath MJ. OMIP-014: Validated multifunctional characterization of antigen-specific human T cells by intracellular cytokine staining. Cytometry A. 2012;81(12):1019-21.
http://www.ncbi.nlm.nih.gov/pubmed/23081852?otool=fhcrclib

41. Defawe OD, Fong Y, Vasilyeva E, Pickett M, Carter DK, Gabriel E, et al. Optimization and qualification of a multiplex bead array to assess cytokine and chemokine production by vaccine-specific cells. Journal of immunological methods. 2012;382(1-2):117-28.
http://www.ncbi.nlm.nih.gov/pubmed/22626638?otool=fhcrclib

42. Delaney S, Gardella C, Daruthayan C, Saracino M, Drolette L, Corey L, et al. A prospective cohort study of partner testing for herpes simplex virus and sexual behavior during pregnancy. The Journal of infectious diseases. 2012;206(4):486-94.
http://www.ncbi.nlm.nih.gov/pubmed/22693233?otool=fhcrclib

43. Delva W, Wilson DP, Abu-Raddad L, Gorgens M, Wilson D, Hallett TB, et al. HIV treatment as prevention: principles of good HIV epidemiology modelling for public health decision-making in all modes of prevention and evaluation. PLoS Med. 2012;9(7):e1001239.
http://www.ncbi.nlm.nih.gov/pubmed/22802729?otool=fhcrclib

44. Dezzutti CS, Brown ER, Moncla B, Russo J, Cost M, Wang L, et al. Is wetter better? An evaluation of over-the-counter personal lubricants for safety and anti-HIV-1 activity. PloS one. 2012;7(11):e48328.
http://www.ncbi.nlm.nih.gov/pubmed/23144863?otool=fhcrclib

45. Dezzutti CS, Richardson BA, Marrazzo JM, Tugetman J, Ramjee G, Taha T, et al. Mucosal Escherichia coli Bactericidal Activity and Immune Mediators Are Associated With HIV-1 Seroconversion in Women Participating in the HPTN 035 Trial. The Journal of infectious diseases. 2012;206(12):1931-5.
http://www.ncbi.nlm.nih.gov/pubmed/22966121?otool=fhcrclib

46. Doehle BP, Chang K, Fleming L, McNevin J, Hladik F, McElrath MJ, et al. Vpu deficient HIV strains stimulate innate immune signaling responses in target cells. Journal of virology. 2012;86(16):8499-506.
http://www.ncbi.nlm.nih.gov/pubmed/22647704?otool=fhcrclib

47. Doehle BP, Chang K, Rustagi A, McNevin J, McElrath MJ, Gale M. Vpu mediates IRF3 depletion during HIV infection by a lysosomal-dependent mechanism. Journal of virology. 2012.
http://www.ncbi.nlm.nih.gov/pubmed/22593165?otool=fhcrclib

48. Donaldson MM, Kao S-F, Eslamizar L, Gee C, Koopman G, Lifton M, et al. Optimization and qualification of an 8-color intracellular cytokine staining assay for quantifying T cell responses in rhesus macaques for pre-clinical vaccine studies. Journal of immunological methods. 2012;386(1-2):10-21.
http://www.ncbi.nlm.nih.gov/pubmed/22955212?otool=fhcrclib

49. Donnell DJ, Hall HI, Gamble T, Beauchamp G, Griffin AB, Torian LV, et al. Use of HIV Case Surveillance System to Design and Evaluate Site-Randomized Interventions in an HIV Prevention Study: HPTN 065. Open AIDS J. 2012;6:122-30.
http://www.ncbi.nlm.nih.gov/pubmed/23049660?otool=fhcrclib

50. Drake AL, Roxby AC, Kiarie J, Richardson BA, Wald A, John-Stewart G, et al. Infant safety during and after maternal valacyclovir therapy in conjunction with antiretroviral HIV-1 prophylaxis in a randomized clinical trial. PloS one. 2012;7(4):e34635.
http://www.ncbi.nlm.nih.gov/pubmed/22509337?otool=fhcrclib

51. Drake AL, Roxby AC, Ongecha-Owuor F, Kiarie J, John-Stewart G, Wald A, et al. Valacyclovir Suppressive Therapy Reduces Plasma and Breast Milk HIV-1 RNA Levels During Pregnancy and Postpartum: A Randomized Trial. The Journal of infectious diseases. 2012;205(3):366-75.   
http://www.ncbi.nlm.nih.gov/pubmed/22147786?otool=fhcrclib

52. Duerr A. HIV treatment as protection:  next steps. Current opinion in HIV and AIDS. 2012;7(2):97-8.
http://www.ncbi.nlm.nih.gov/pubmed/22241162?otool=fhcrclib

53. Duerr A, Altice FL, Harries AD, Sohn AH. Antiretroviral treatment in resource-limited settings 2012. AIDS Res Treat. 2012;2012:346708.
http://www.ncbi.nlm.nih.gov/pubmed/22888412?otool=fhcrclib

54. Duerr A, Huang Y, Buchbinder S, Coombs RW, Sanchez J, del Rio C, et al. Extended Follow-up Confirms Early Vaccine-Enhanced Risk of HIV Acquisition and Demonstrates Waning Effect Over Time Among Participants in a Randomized Trial of Recombinant Adenovirus HIV Vaccine (Step Study). The Journal of infectious diseases. 2012;206(2):258-66.   
http://www.ncbi.nlm.nih.gov/pubmed/22561365?otool=fhcrclib

55. Edelstein ZR, Schwartz SM, Hawes S, Hughes JP, Feng Q, Stern ME, et al. Rates and determinants of oral human papillomavirus infection in young men. Sexually transmitted diseases. 2012;39(11):860-7.
http://www.ncbi.nlm.nih.gov/pubmed/23064535?otool=fhcrclib

56. Etter P, Landovitz R, Sibeko S, Sobieszczyk ME, Riddler SA, Karg C, et al. Recommendations for the follow-up of study participants with breakthrough HIV infections during HIV/AIDS biomedical prevention studies. AIDS (London, England). 2012.
http://www.ncbi.nlm.nih.gov/pubmed/23262497?otool=fhcrclib

57. Finak G, Jiang W, Pardo J, Asare A, Gottardo R. QUAliFiER: An automated pipeline for quality assessment of gated flow cytometry data. BMC Bioinformatics. 2012;13(1):252.   
http://www.ncbi.nlm.nih.gov/pubmed/23020243?otool=fhcrclib

58. Finton KA, Strong RK. Structural insights into activation of antiviral NK cell responses. Immunol Rev. 2012;250(1):239-57.
http://www.ncbi.nlm.nih.gov/pubmed/23046134?otool=fhcrclib

59. Fogel JM, Mwatha A, Richardson P, Brown ER, Chipato T, Alexandre M, et al. Impact of Maternal and Infant Antiretroviral Drug Regimens on Drug Resistance in HIV-Infected Breastfeeding Infants. The Pediatric infectious disease journal. 2012.
http://www.ncbi.nlm.nih.gov/pubmed/23249916?otool=fhcrclib

60. Fong Y, Wakefield J, De Rosa S, Frahm N. A Robust Bayesian Random Effects Model for Nonlinear Calibration Problems. Biometrics. 2012;68(4):1103-12.
http://www.ncbi.nlm.nih.gov/pubmed/22551415?otool=fhcrclib

61. Frahm N, Decamp AC, Friedrich DP, Carter DK, Defawe OD, Kublin JG, et al. Human adenovirus-specific T cells modulate HIV-specific T cell responses to an Ad5-vectored HIV-1 vaccine. The Journal of clinical investigation. 2012;122(1):359-67.
http://www.ncbi.nlm.nih.gov/pubmed/22201684?otool=fhcrclib

62. Fukazawa Y, Park H, Cameron MJ, Lefebvre F, Lum R, Coombes N, et al. Lymph node T cell responses predict the efficacy of live attenuated SIV vaccines. Nat Med. 2012;18(11):1673-81.
http://www.ncbi.nlm.nih.gov/pubmed/22961108?otool=fhcrclib

63. Gilbert PB, Grove D, Gabriel E, Huang Y, Gray G, Hammer SM, et al. A Sequential Phase 2b Trial Design for Evaluating Vaccine Efficacy and Immune Correlates for Multiple HIV Vaccine Regimens. Statistical Communications in Infectious Diseases. 2012;3(1).

64. Gilbert PB, Rossini AJ, Shankarappa R. Response to Reader Reaction to "Two-Sample Tests for Comparing Intra-Individual Genetic Sequence Diversity Between Populations". Biometrics. 2012;68(4):1326.   
http://www.ncbi.nlm.nih.gov/pubmed/23004918?otool=fhcrclib

65. Goo L, Jalalian-Lechak Z, Richardson BA, Overbaugh J. A Combination of Broadly Neutralizing HIV-1 Monoclonal Antibodies Targeting Distinct Epitopes Effectively Neutralizes Variants Found in Early Infection. Journal of virology. 2012;86(19):10857-61.
http://www.ncbi.nlm.nih.gov/pubmed/22837204?otool=fhcrclib

66. Gopal S, Wood WA, Lee SJ, Shea TC, Naresh KN, Kazembe PN, et al. Meeting the challenge of hematologic malignancies in sub-Saharan Africa. Blood. 2012;119(22):5078-87.   
http://www.ncbi.nlm.nih.gov/pubmed/22461494?otool=fhcrclib

67. Gorse GJ, Newman MJ, DeCamp A, Hay CM, De Rosa SC, Noonan E, et al. DNA and modified vaccinia virus Ankara vaccines encoding multiple cytotoxic and helper T-lymphocyte epitopes of human immunodeficiency virus type 1 (HIV-1) are safe but weakly immunogenic in HIV-1-uninfected, vaccinia virus-naive adults. Clin Vaccine Immunol. 2012;19(5):649-58.
http://www.ncbi.nlm.nih.gov/pubmed/22398243?otool=fhcrclib

68. Green ML, Leisenring W, Stachel D, Pergam SA, Sandmaier BM, Wald A, et al. Efficacy of a Viral Load-Based, Risk-Adapted, Preemptive Treatment Strategy for Prevention of Cytomegalovirus Disease after Hematopoietic Cell Transplantation. Biology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation. 2012;18(11):1687-99.
http://www.ncbi.nlm.nih.gov/pubmed/22683614?otool=fhcrclib

69. Gründer C, van Dorp S, Hol S, Drent E, Straetemans T, Heijhuurs S, et al. γ9 and δ2CDR3 domains regulate functional avidity of T cells harboring γ9δ2TCRs. Blood. 2012;120(26):5153-62.
http://www.ncbi.nlm.nih.gov/pubmed/23018643?otool=fhcrclib

70. Guerrero A, Riddell SR, Storek J, Stevens-Ayers T, Storer BE, Zaia JA, et al. Cytomegalovirus Viral Load and Virus-Specific Immune Reconstitution after Peripheral Blood Stem Cell versus Bone Marrow Transplantation. Biology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation. 2012;18(1):66-75.   
http://www.ncbi.nlm.nih.gov/pubmed/21664286?otool=fhcrclib

71. Guthrie BL, Lohman-Payne B, Liu AY, Bosire R, Nuvor SV, Choi RY, et al. HIV-1-Specific Enzyme-Linked Immunosorbent Spot Assay Responses in HIV-1-Exposed Uninfected Partners in Discordant Relationships Compared to Those in Low-Risk Controls. Clin Vaccine Immunol. 2012;19(11):1798-805.
http://www.ncbi.nlm.nih.gov/pubmed/22971780?otool=fhcrclib

72. Halloran ME, Hudgens MG. Comparing bounds for vaccine effects on infectiousness. Epidemiology. 2012;23(6):931-2.
http://www.ncbi.nlm.nih.gov/pubmed/23038122?otool=fhcrclib

73. Halloran ME, Hudgens MG. Causal Inference for Vaccine Effects on Infectiousness. 2012;8(2):Article 6.

74. Haynes BF, Gilbert PB, McElrath MJ, Zolla-Pazner S, Tomaras GD, Alam SM, et al. Immune-correlates analysis of an HIV-1 vaccine efficacy trial. N Engl J Med. 2012;366(14):1275-86.
http://www.ncbi.nlm.nih.gov/pubmed/22475592?otool=fhcrclib

75. Heffron R, Donnell D, Rees H, Celum C, Mugo N, Were E, et al. Use of hormonal contraceptives and risk of HIV-1 transmission: a prospective cohort study. The Lancet infectious diseases. 2012;12(1):19-26.   
http://www.ncbi.nlm.nih.gov/pubmed/21975269?otool=fhcrclib

76. Hensley TR, Easter AB, Gerdts SE, De Rosa SC, Heit A, McElrath MJ, et al. Enumeration of major peripheral blood leukocyte populations for multicenter clinical trials using a whole blood phenotyping assay. J Vis Exp. 2012 (67):e4302.
http://www.ncbi.nlm.nih.gov/pubmed/23007739?otool=fhcrclib

77. Huang Y, Gilbert PB, Janes H. Assessing Treatment-Selection Markers using a Potential Outcomes Framework. Biometrics. 2012;68(3):687-96.   
http://www.ncbi.nlm.nih.gov/pubmed/22299708?otool=fhcrclib

78. Huang Y, Gottardo R. Comparability and reproducibility of biomedical data. Brief Bioinformatics. 2012.
http://www.ncbi.nlm.nih.gov/pubmed/23193203?otool=fhcrclib

79. Huang Y, Huang Y, Moodie Z, Li S, Self S. Comparing and combining data across multiple sources via integration of paired-sample data to correct for measurement error. Statistics in medicine. 2012;31(28):3748-59.
http://www.ncbi.nlm.nih.gov/pubmed/22764070?otool=fhcrclib

80. Hughes JP, Baeten JM, Lingappa JR, Magaret AS, Wald A, de Bruyn G, et al. Determinants of Per-Coital-Act HIV-1 Infectivity Among African HIV-1-Serodiscordant Couples. The Journal of infectious diseases. 2012;205(3):358-65.   
http://www.ncbi.nlm.nih.gov/pubmed/22241800?otool=fhcrclib

81. Ishida K, Arnold M, Stupp P, Kizito P, Ichwara J. Exploring the connections between HIV serostatus and individual, household, and community socioeconomic resources: evidence from two population-based surveys in Kenya. Soc Sci Med. 2012;74(2):185-95.
http://www.ncbi.nlm.nih.gov/pubmed/22169625?otool=fhcrclib

82. Jackson LA, Chen WH, Stapleton JT, Dekker CL, Wald A, Brady RC, et al. Immunogenicity and Safety of Varying Dosages of a Monovalent 2009 H1N1 Influenza Vaccine Given With and Without AS03 Adjuvant System in Healthy Adults and Older Persons. The Journal of infectious diseases. 2012;206(6):811-20.
http://www.ncbi.nlm.nih.gov/pubmed/22782949?otool=fhcrclib

83. Jacob ST, Banura P, Baeten JM, Moore CC, Meya D, Nakiyingi L, et al. The impact of early monitored management on survival in hospitalized adult Ugandan patients with severe sepsis: A prospective intervention study. Critical care medicine. 2012;40(7):2050-8.
http://www.ncbi.nlm.nih.gov/pubmed/22564958?otool=fhcrclib

84. James MM, Wang L, Donnell D, Cousins MM, Barlow-Mosha L, Fogel JM, et al. Use of a High Resolution Melting Assay to Analyze HIV Diversity in HIV-infected Ugandan Children. The Pediatric infectious disease journal. 2012;31(11):E222-E8.
http://www.ncbi.nlm.nih.gov/pubmed/22785048?otool=fhcrclib

85. Janes H, Frahm N, DeCamp A, Rolland M, Gabriel E, Wolfson J, et al. MRKAd5 HIV-1 Gag/Pol/Nef Vaccine-Induced T-Cell Responses Inadequately Predict Distance of Breakthrough HIV-1 Sequences to the Vaccine or Viral Load. PloS one. 2012;7(8):e43396.
http://www.ncbi.nlm.nih.gov/pubmed/22952672?otool=fhcrclib

86. Jhingran A, Mar KB, Kumasaka DK, Knoblaugh SE, Ngo LY, Segal BH, et al. Tracing conidial fate and measuring host cell antifungal activity using a reporter of microbial viability in the lung. Cell Rep. 2012;2(6):1762-73.
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