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Research interests and publications



Research interests:

Cell division control in yeast.


Our focus is to understand how the commitment to the mitotic cell cycle is regulated in response to environmental and internal cues, as well as adversities such as DNA damage. The critical transitions in the eukaryotic cell cycle are controlled by cyclin-dependent kinases (CDKs). Both the structure and function of these CDKs are so highly conserved that the first human CDKs were identified by complementation of mutations in their fission yeast counterparts. The molecular and genetic analysis of yeast continues to provide crucial insights into how these complexes are regulated and what they do. In budding yeast, as in all higher eukaryotes, the decision to commit to another division cycle occurs in G1. Nine cyclins have been identified that bind and activate a single CDK, and three of these cyclins (Cln1,2 and 3) play critical roles in modulating the decision to exit from G1 and begin another cell cycle. We are studying what controls the expression of these three G1 cyclins and other critical cell cycle regulators that are specifically expressed during G1.

There are two consecutive waves of transcription that occur during G1. The first occurs at the M/G1 boundary and we have defined a new promoter element, the ECB, which activates transcription of CLN3 and other key cell cycle regulators at this time. The second wave of transcription is conferred by at least two other promoter elements (SCBs and MCBs), which are activated near the G1/S boundary to induce the expression of CLN1, CLN2 and dozens of other genes that are required for DNA replication and cell wall synthesis. Our goal is to understand how internal and external signals modulate the activity of these transcription complexes and control the timing of the transition to S phase.

Another adaptive feature of the cell cycle in all cells is a set of surveillance mechanisms which delay the cycle when damage occurs. In the case of DNA damage, cells are able to delay in G1, S and/or G2 in order for repair to take place. DNA damage induces a kinase cascade which phosphorylates substrates responsible for the arrest of the cell cycle and the repair. Mutations in the genes in this checkpoint pathway prevent the delay and lead to an increased sensitivity to DNA damage in yeast and humans. We are also investigating the mechanism by which these kinases arrest the cell cycle in G1. Our recent work suggests that the damage-dependent delay of cells in G1 may involve down-regulation of G1 cyclin expression by both transcriptional and post-transcriptional mechanisms.

 


Publications: (Click on authors to see abstract)

  • Mai B, Breeden LL:
    CLN1 and its repression by Xbp1 are important for efficient sporulation in budding yeast. Mol. Cell. Biol. 2000 Jan;20(2): 478-487.
  • Sidorova J, Breeden LL:
    The MSN1 and NHP6A genes suppress SWI6 defects in Saccharomyces cerevisiae.
    Genetics. 1999 Jan;151(1):45-55.
  • Ewaskow SP, Sidorova JM, Hendle J, Emery JC, Lycan DE, Zhang KY, Breeden LL:
    Mutation and modeling analysis of the Saccharomyces cerevisiae Swi6 ankyrin repeats.
    Biochemistry. 1998 Mar 31;37(13):4437-50.
  • Sidorova JM, Breeden LL:
    Rad53-dependent phosphorylation of Swi6 and down-regulation of CLN1 and CLN2 transcription occur in response to DNA damage in Saccharomyces cerevisiae.
    Genes Dev. 1997 Nov 15;11(22):3032-45.
  • Mai B, Breeden LL:
    Xbp1, a stress-induced transcriptional repressor of the Saccharomyces cerevisiae Swi4/Mbp1 family.
    Mol Cell Biol. 1997 Nov;17(11):6491-501.
  • McInerny CJ,Partridge JF, Mikesell GE, Creemer DP, Breeden LL:
    A novel Mcm1-dependent element in the SWI4, CLN3, CDC6, and CDC47 promoters activates M/G1-specific transcription.
    Genes Dev. 1997 May 15;11(10):1277-88.
  • Partridge JF, Mikesell GE, Breeden LL.:
    Cell cycle-dependent transcription of CLN1 involves swi4 binding to MCB-like elements.
    J Biol Chem. 1997 Apr 4;272(14):9071-7.
  • Breeden L.
    Alpha-factor synchronization of budding yeast.
    Methods Enzymol. 1997;283:332-41.
  • Lycan DE, Stafford KA, Bollinger W, Breeden LL:
    A new Saccharomyces cerevisiae ankyrin repeat-encoding gene required for a normal rate of cell proliferation.
    Gene. 1996 May 24;171(1):33-40.
  • Breeden L.
    Start-specific transcription in yeast.
    Curr Top Microbiol Immunol. 1996;208:95-127. Review. No abstract available.
  • Sidorova JM, Mikesell GE, Breeden LL:
    Cell cycle-regulated phosphorylation of Swi6 controls its nuclear localization.
    Mol Biol Cell. 1995 Dec;6(12):1641-58.
  • Breeden L,Mikesell G:
    Three independent forms of regulation affect expression of HO, CLN1 and CLN2 during the cell cycle of Saccharomyces cerevisiae.
    Genetics. 1994 Dec;138(4):1015-24.
  • Lycan D, Mikesell G, Bunger M, Breeden L:
    Differential effects of Cdc68 on cell cycle-regulated promoters in Saccharomyces cerevisiae.
    Mol Cell Biol. 1994 Nov;14(11):7455-65.
  • Foster R, Mikesell GE, Breeden L:
    Multiple SW16-dependent cis-acting elements control SWI4 transcription through the cell cycle.
    Mol Cell Biol. 1993 Jun;13(6):3792-801.
  • Sidorova J, Breeden LL:
    Analysis of the SW14/SW16 protein complex, which directs G1/S-specific transcription in Saccharomyces cerevisiae.
    Mol Cell Biol. 1993 Feb;13(2):1069-77.
  • Lowndes NF, Johnson AL, Breeden L, Johnston LH:
    SWI6 protein is required for transcription of the periodically expressed DNA synthesis genes in budding yeast.
    Nature. 1992 Jun 11;357(6378):505-8.
  • Breeden L, Mikesell GE:
    Cell cycle-specific expression of the SWI4 transcription factor is required for the cell cycle regulation of HO transcription.
    Genes Dev. 1991 Jul;5(7):1183-90.
  • Breeden L.
    Cell cycle-regulated promoters in budding yeast.
    Trends Genet. 1988 Sep;4(9):249-53. Review. No abstract available.
  • Breeden L, Nasmyth K:
    Similarity between cell-cycle genes of budding yeast and fission yeast and the Notch gene of Drosophila.
    Nature. 1987 Oct 15-21;329(6140):651-4.
  • Breeden L, Nasmyth K:
    Cell cycle control of the yeast HO gene: cis- and trans-acting regulators.
    Cell. 1987 Feb 13;48(3):389-97.

  •      Last update: 8/18/01