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This list of genes is periodically
updated. An Excel version
of this file is available. 1627 sequence tags have been submitted to NCBI's dbGSS (8.12.04). • 687 known genes, excluding ESTs and multiple hits in the same gene (2.15.05). • 1030 NCBI sequences represented in database (includes known genes and ESTs, excludes multiple hits). Perform BLAST searches for disruptions of specific genes. If you want to browse and have reached this page independently, please note that the following database only provides information on a subset of our traps, representing insertions in known, curated genes. This does not include novel genes not annotated previously. The majority of sequences have been obtained using 3' RACE for genes present in our gene trap array (ROSAFARY vector; Chen et al., 2004). Additional information including oligo sequences used in the 3'RACE with the ROSAFARY vector can be found here. Sequence information for other disruptions is obtained BY 5' RACE (ROSAbgeo or ROSAbgeo*) or direct sequencing of the genomic locus (ROSAbgeo*UAS). Detailed description of methods used for gene trap mutagenesis may be found in Friedrich, G., and Soriano, P. (1993) and Chen, W.V., and Soriano, P. (2003). Sequence ID, dbGSS Genbank Acc, are specific to our clones and are found in NCBI's dbGSS. Locus ID, Symbol, Name, Chromosome, Genbank Acc, Insertion, Coding sequence: this information was collected from NCBI BLAST and Locus Link and is specific to the curated gene corresponding to our tag. The approximate relative position of insertion within the transcriptional unit is found under Position. Some genes may have been trapped multiple times (# Hits). To access sequence information, please use either the dbGSS Genbank Acc number or the GSS name of your clone of interest in a search of NCBI's dbGSS. Sequence-annotated gene trap ES cell clones will be made available for non-commercial, academic research purposes only at not-for-profit institutions. These cell lines may be ordered from the MMRRC. You can also search for our clones in the MMRRC catalog. |
| Sequence ID GSS Name | dbGSS Genbank Acc | LocusID | Symbol | Name | Chrom. | Genbank Acc | Insertion | Coding Sequence | Position | HITS | Requests |
| S9-2G1 | CG899710 | 18607 | Pdpk1 | 3-phosphoinositide dependent protein kinase-1 | 17 | NM_011062 | 125 | 101..1780 | CDS 0.01 | 1 | |
| S10-3C1 | CL256270 | 17769 | Mthfr | 5,10-methylenetetrahydrofolate reductase | 4 | NM_010840 | 5238 | 114..2078 | 3'UTR | 1 | |
| S20-2F1 | CL706113 | 56697 | Akap10 | A kinase (PRKA) anchor protein 10 | 11 | NM_019921 | 242 | 151..2139 | CDS 0.05 | 1 | |
| S6-11A1 | CG784153 | 57869 | Adck2 | aarF domain containing kinase 2 | 6 | NM_178873 | 1370 | 427..2280 | CDS 0.51 | 1 | |
| S8-8E2 | CG691697 | 11364 | Acadm | acetyl-Coenzyme A dehydrogenase, medium chain | 3 | NM_007382 | 38 | 8..1273 | CDS 0.02 | 2 | |
| S23-2G1 | CL706530 | 11364 | Acadm | acetyl-Coenzyme A dehydrogenase, medium chain | 3 | NM_007382 | 126 | 8..1273 | CDS 0.09 | 2 | |
| S13-11H1 | CL458943 | 11429 | Aco2 | aconitase 2, mitochondrial | 15 | NM_080633 | 289 | 77..2419 | CDS 0.09 | 1 | |
| S9-4G1 | CG899724 | 60595 | Actn4 | actinin alpha 4 | 3 | NM_021895 | 263 | 98..2836 | CDS 0.06 | 1 | |
| S13-9C1 | CL458994 | 11909 | Atf2 | activating transcription factor 2 | 2 | NM_009715 | 462 | 437..1780 | CDS 0.02 | 1 | |
| S1-11D1 | CG425408 | 11480 | Acvr2 | activin receptor IIA | 2 | NM_007396 | 767 | 617..2158 | CDS 0.10 | 1 | |
| S15-7E1 | CL517192 | 11773 | Ap2m1 | adaptor protein complex AP-2, mu1 | 16 | NM_009679 | 216 | 142..1449 | CDS 0.06 | 1 | |
| S14-9A1 | CL459687 | 11518 | Add1 | adducin 1 (alpha) | 5 | NM_013457 | 101 | 119..2017 | 5'UTR | 2 | |
| S21-11H1 | CL706437 | 11518 | Add1 | adducin 1 (alpha) | 5 | NM_013457 | 99 | 119..2017 | 5'UTR | 2 | |
| S13-4D1 | CL458970 | 11534 | Adk | adenosine kinase | 14 | NM_134079 | 118 | 31..1116 | CDS 0.08 | 3 | |
| S15-11C1 | CL517155 | 11534 | Adk | adenosine kinase | 14 | NM_134079 | 96 | 31..1116 | CDS 0.06 | 3 | |
| S1-2H1 | CG425351 | 11534 | Adk | adenosine kinase | 14 | NM_134079 | 96 | 31..1116 | CDS 0.06 | 3 | |
| S10-12D1 | CL256253 | 72674 | Adipor1 | adiponectin receptor 1 | 1 | NM_028320 | 107 | 201..1328 | 5'UTR | 1 | |
| S13-12B1 | CL458945 | 239435 | Aard | alanine and arginine rich domain containing protein | 15 | NM_175503 | 426 | 78..581 | CDS 0.69 | 1 | |
| S21-1E1 | CL706448 | 16790 | Anpep | alanyl (membrane) aminopeptidase | 7 | NM_008486 | 1 | 34..2934 | 5'UTR | 1 | |
| S9-8G1 | CG899749 | 211064 | Alkbh | alkB, alkylation repair homolog (E. coli) | 12 | XM_127049 | 184 | 1..1110 | CDS 0.17 | 1 | |
| S4-3H1 | CG465946 | 100710 | Aprin | androgen-induced proliferation inhibitor | 5 | NM_175310 | 128 | 147..4487 | 5'UTR | 1 | |
| S18-11D1 | CL705952 | 11610 | Agtrap | angiotensin II, type I receptor-associated protein | 4 | NM_009642 | 135 | 108..593 | CDS 0.06 | 1 | |
| S20-6H1 | CL706138 | 11746 | Anxa4 | annexin A4 | 6 | NM_013471 | 50 | 91..1050 | 5'UTR | 1 | |
| S17-11C1 | CG691593 | 80287 | Apobec3 | apolipoprotein B editing complex 3 | 15 | NM_030255 | 145 | 92..1381 | CDS 0.04 | 2 | 2 |
| S4-6E1 | CG465962 | 80287 | Apobec3 | apolipoprotein B editing complex 3 | 15 | NM_030255 | 784 | 92..1381 | CDS 0.54 | 2 | 1 |
| S21-11C1 | CL706432 | 11898 | Ass | argininosuccinate synthetase | 2 | NM_007494 | 737 | 140..1378 | CDS 0.48 | 1 | |
| S7-4B1 | CG784257 | 66403 | Asf1a: | ASF1 anti-silencing function 1 homolog A (S. cerevisiae) | 10 | NM_025541 | 282 | 173..787 | CDS 0.18 | 1 | |
| S3-11A1 | CG465848 | 23808 | Ash2l | ash2 (absent, small, or homeotic)-like (Drosophila) | 8 | NM_011791 | 189 | 13..1911 | CDS 0.09 | 1 | 2 |
| S23-6F1 | CL706555 | 94246 | Arid4b | AT rich interactive domain 4B (Rbp1 like) | 13 | NM_198122 | 297 | 291..4235 | CDS 0.00 | 1 | |
| S10-1A1 | CL256255 | 71371 | Arid5b | AT rich interactive domain 5B (Mrf1 like) | 10 | NM_023598 | 1094 | 242..2473 | CDS 0.38 | 1 | * |
| S11-4F1 | CL266137 | 11920 | Atm | ataxia telangiectasia mutated homolog (human) | 9 | NM_007499 | 12 | 42..9242 | 5'UTR | 1 | |
| S23-5H1 | CL706551 | 24015 | Abce1 | ATP-binding cassette, sub-family E (OABP), member 1 | 8 | NM_015751 | 92 | 115..1914 | 5'UTR | 1 | |
| S17-8A1 | CG691625 | 215418 | Axud1 | AXIN1 up-regulated 1 | 9 | NM_153287 | 281 | 65..1816 | CDS 0.12 | 3 | * |
| S12-10E1 | CL266169 | 215418 | Axud1 | AXIN1 up-regulated 1 | 9 | NM_153287 | 309 | 65..1816 | CDS 0.14 | 3 | |
| S17-7E1 | CL610438 | 215418 | Axud1 | AXIN1 up-regulated 1 | 9 | NM_153287 | 2501 | 65..1816 | 3'UTR | 3 | |
| S20-5H1 | CL706132 | 11797 | Birc2 | baculoviral IAP repeat-containing 2 | 9 | NM_007465 | 1 | 779..2617 | 5'UTR | 1 | |
| S18-9B1 | CL706013 | 14924 | Baiap1 | BAI1-associated protein 1 | 6 | NM_010367 | 1238 | 925..4440 | CDS 0.09 | 1 | |
| S12-6A1 | CL266216 | 16601 | Bteb1 | basic transcription element binding protein 1 | 19 | NM_010638 | 1038 | 533..1267 | CDS 0.69 | 3 | |
| S5-10A1 | CG691458 | 16601 | Bteb1 | basic transcription element binding protein 1 | 19 | NM_010638 | 1038 | 533..1267 | CDS 0.69 | 3 | |
| S5-12G1 | CG691472 | 16601 | Bteb1 | basic transcription element binding protein 1 | 19 | NM_010638 | 1038 | 533..1267 | CDS 0.69 | 3 | |
| S4-3E1 | CG465944 | 12033 | Bcap29 | B-cell receptor-associated protein 29 | 12 | NM_007530 | 229 | 255..977 | 5'UTR | 1 | |
| S21-11G1 | CL706436 | 54399 | Bet1l | blocked early in transport 1 homolog (S. cerevisiae)-like | 7 | NM_018742 | 141 | 30..365 | CDS 0.33 | 1 | |
| S21-5A1 | CL706468 | 12144 | Blm | Bloom syndrome homolog (human) | 7 | NM_007550 | 339 | 343..4593 | 5'UTR | 1 | |
| S13-12F1 | CL458947 | 192285 | Bhc80 | BRAF35/HDAC2 complex | 2 | NM_138755 | 187 | 270..1940 | 5'UTR | 1 | |
| S6-7G1 | CG784206 | 29815 | Bcar3 | breast cancer anti-estrogen resistance 3 | 3 | NM_013867 | 353 | 364..2826 | 5'UTR | 1 | |
| S5-8D1 | CG691517 | 76809 | Bri3bp | Bri3 binding protein | 5 | XM_132386 | 307 | 45..533 | CDS 0.54 | 1 | |
| S19-7H1 | CL706077 | 12552 | cdh11 | cadherin 11 | 8 | NM_009866 | 302 | 101..1401 | CDS 0.15 | 1 | * |
| S14-4D1 | CL459670 | 12301 | Cacybp | calcyclin binding protein | 1 | NM_009786 | 645 | 111..800 | CDS 0.78 | 1 | |
| S20-12D1 | CL706099 | 12912 | Creb1 | cAMP responsive element binding protein 1 | 1 | NM_009952 | 998 | 102..1127 | CDS 0.87 | 1 | |
| S8-3C1 | CG691666 | 12345 | Capzb | capping protein (actin filament) muscle Z-line, beta | 4 | NM_009798 | 348 | 19..837 | CDS 0.40 | 5 | |
| S9-3A1 | CG899711 | 12345 | Capzb | capping protein (actin filament) muscle Z-line, beta | 4 | NM_009798 | 234 | 19..837 | CDS 0.26 | 5 | |
| S18-1F1 | CL705966 | 12345 | Capzb | capping protein (actin filament) muscle Z-line, beta | 4 | NM_009798 | 22 | 19..837 | CDS 0.00 | 5 | |
| S4-11C1 | CG465923 | 12345 | Capzb | capping protein (actin filament) muscle Z-line, beta | 4 | NM_009798 | 261 | 19..837 | CDS 0.30 | 5 | |
| S6-1H1 | CG784169 | 12345 | Capzb | capping protein (actin filament) muscle Z-line, beta | 4 | NM_009798 | 73 | 19..837 | CDS 0.07 | 5 | |
| S17-9H1 | CL610446 | 56773 | Chst5 | carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5 | 8 | NM_019950 | 92 | 107..1294 | 5'UTR | 1 | |
| S14-8H1 | CL459686 | 27373 | Csnk1e | casein kinase 1, epsilon | 15 | NM_013767 | 261 | 92..1342 | CDS 0.14 | 1 | |
| S13-2B1 | CL458956 | 12905 | Cradd | CASP2 and RIPK1 domain containing adaptor with death domain | 10 | NM_009950 | 417 | 119..718 | CDS 0.50 | 1 | |
| S15-1F1 | CL517165 | 12385 | Catna1 | catenin alpha 1 | 18 | NM_009818 | 72 | 73..2793 | 5'UTR | 1 | |
| S3-6E1 | CG465886 | 54366 | Catnal1 | catenin alpha-like 1 | 4 | NM_018761 | 213 | 75..2270 | CDS 0.06 | 1 | |
| S1-5D1 | CG425369 | 13018 | Ctcf | CCCTC-binding factor | 8 | NM_007794 | 144 | 307..2517 | 5'UTR | 1 | |
| S1-1E1 | CG399810 | 18983 | Cnot7 | CCR4-NOT transcription complex, subunit 7 | 8 | NM_011135 | 1082 | 1177..2034 | 5'UTR | 1 | |
| S2-6F1 | CG425460 | 12488 | Cd2ap | CD2-associated protein | 17 | NM_009847 | 92 | 84..1997 | CDS 0.00 | 1 | |
| S14-6A1 | CL459675 | 12509 | Cd59a | CD59a antigen | 2 | NM_007652 | 156 | 95..466 | CDS 0.16 | 1 | |
| S21-10B1 | CL706424 | 12527 | Cd9 | CD9 antigen | 6 | NM_007657 | 183 | 117..797 | CDS 0.10 | 2 | |
| S1-9A1 | CG425395 | 12527 | Cd9 | CD9 antigen | 6 | NM_007657 | 183 | 123..803 | CDS 0.09 | 2 | |
| S8-1H1 | CG691652 | 54124 | Cks1 | CDC28 protein kinase 1 | 3 | NM_016904 | 172 | 79..318 | CDS 0.39 | 1 | |
| S17-5F1 | CG691620 | 66197 | Cks2 | CDC28 protein kinase regulatory subunit 2 | 13 | NM_025415 | 149 | 90..329 | CDS 0.25 | 21 | |
| S8-5B1 | CG691676 | 66197 | Cks2 | CDC28 protein kinase regulatory subunit 2 | 13 | NM_025415 | 149 | 90..329 | CDS 0.25 | 21 | |
| S9-1G1 | CG899705 | 66197 | Cks2 | CDC28 protein kinase regulatory subunit 2 | 13 | NM_025415 | 149 | 90..329 | CDS 0.25 | 21 | |
| S9-9C1 | CG899753 | 66197 | Cks2 | CDC28 protein kinase regulatory subunit 2 | 13 | NM_025415 | 149 | 90..329 | CDS 0.25 | 21 | |
| S10-7E1 | CL256294 | 66197 | Cks2 | CDC28 protein kinase regulatory subunit 2 | 13 | NM_025415 | 149 | 90..329 | CDS 0.25 | 21 | |
| S11-10E1 | CL266106 | 66197 | Cks2 | CDC28 protein kinase regulatory subunit 2 | 13 | NM_025415 | 149 | 90..329 | CDS 0.25 | 21 | |
| S11-11H1 | CL266112 | 66197 | Cks2 | CDC28 protein kinase regulatory subunit 2 | 13 | NM_025415 | 149 | 90..329 | CDS 0.25 | 21 | |
| S11-9D1 | CL266162 | 66197 | Cks2 | CDC28 protein kinase regulatory subunit 2 | 13 | NM_025415 | 196 | 90..329 | CDS 0.44 | 21 | |
| S12-12A1 | CL266179 | 66197 | Cks2 | CDC28 protein kinase regulatory subunit 2 | 13 | NM_025415 | 149 | 90..329 | CDS 0.25 | 21 | |
| S12-12B1 | CL266180 | 66197 | Cks2 | CDC28 protein kinase regulatory subunit 2 | 13 | NM_025415 | 149 | 90..330 | CDS 0.25 | 21 | |
| S15-11A1 | CL517154 | 66197 | Cks2 | CDC28 protein kinase regulatory subunit 2 | 13 | NM_025415 | 149 | 90..329 | CDS 0.25 | 21 | |
| S15-7F1 | CL517193 | 66197 | Cks2 | CDC28 protein kinase regulatory subunit 2 | 13 | NM_025415 | 149 | 90..329 | CDS 0.25 | 21 | |
| S16-10B1 | CL526227 | 66197 | Cks2 | CDC28 protein kinase regulatory subunit 2 | 13 | NM_025415 | 149 | 90..329 | CDS 0.25 | 21 | |
| S16-3G1 | CL526261 | 66197 | Cks2 | CDC28 protein kinase regulatory subunit 2 | 13 | NM_025415 | 149 | 90..329 | CDS 0.25 | 21 | |
| S16-7D1 | CL526282 | 66197 | Cks2 | CDC28 protein kinase regulatory subunit 2 | 13 | NM_025415 | 149 | 90..329 | CDS 0.25 | 21 | |
| S19-12C1 | CL706029 | 66197 | Cks2 | CDC28 protein kinase regulatory subunit 2 | 13 | NM_025415 | 149 | 90..329 | CDS 0.25 | 21 | |
| S19-7D1 | CL706073 | 66197 | Cks2 | CDC28 protein kinase regulatory subunit 2 | 13 | NM_025415 | 149 | 90..329 | CDS 0.25 | 21 | |
| S3-11D1 | CG465850 | 66197 | Cks2 | CDC28 protein kinase regulatory subunit 2 | 13 | NM_025415 | 149 | 90..329 | CDS 0.25 | 21 | |
| S3-11F1 | CG465851 | 66197 | Cks2 | CDC28 protein kinase regulatory subunit 2 | 13 | NM_025415 | 149 | 90..329 | CDS 0.25 | 21 | |
| S5-1F1 | CG691477 | 66197 | Cks2 | CDC28 protein kinase regulatory subunit 2 | 13 | NM_025415 | 193 | 90..329 | CDS 0.43 | 21 | |
| S7-10F1 | CG784222 | 66197 | Cks2 | CDC28 protein kinase regulatory subunit 2 | 13 | NM_025415 | 148 | 90..329 | CDS 0.24 | 21 | |
| S12-3F1 | CL266200 | 56699 | Cdc42ep4 | CDC42 effector protein (Rho GTPase binding) 4 | 11 | NM_020006 | 3228 | 691..1740 | 3'UTR | 1 | |
| S5-3F1 | CG691492 | 13445 | Cdk2ap1 | CDK2 (cyclin-dependent kinase 2)-associated protein 1 | 11 | NM_013812 | 315 | 258..602 | CDS 0.17 | 2 | |
| S1-12D1 | CG425413 | 13445 | Cdkap1 | CDK2 (cyclin-dependent kinase 2)-associated protein 1 | 5 | NM_013812 | 315 | 137..400 | CDS 0.68 | 2 | |
| S2-2B1 | CG425436 | 245945 | BC013481 | cDNA sequence BC013481 | 5 | NM_139065 | 415 | 274..2046 | CDS 0.08 | 1 | |
| S13-3G1 | CL458965 | 225913 | BC021917 | cDNA sequence BC021917 | 19 | NM_145496 | 1 | 89..1825 | 5'UTR | 1 | |
| S8-11H1 | CG691642 | 232983 | BC024561 | cDNA sequence BC024561 | 7 | NM_153576 | 186 | 107..493 | CDS 0.20 | 1 | |
| S16-11F1 | CL526235 | 232947 | BC024868 | cDNA sequence BC024868 | 7 | NM_199149 | 688 | 370..2508 | CDS 0.15 | 1 | |
| S5-6A1 | CG691503 | 224807 | BC026370 | cDNA sequence BC026370 | 17 | NM_198167 | 24 | 48..2546 | 5'UTR | 1 | |
| S12-2A1 | CL266191 | 210982 | BC032203 | cDNA sequence BC032203 | 17 | XM_140041 | 2321 | 1..3408 | CDS 0.68 | 5 | |
| S14-7D1 | CL459679 | 210982 | BC032203 | cDNA sequence BC032203 | 17 | XM_140041 | 2429 | 1..3408 | CDS 0.71 | 5 | |
| S18-4F1 | CL705984 | 210982 | BC032203 | cDNA sequence BC032203 | 17 | XM_140041 | 2283 | 1..3408 | CDS 0.67 | 5 | |
| S23-3H1 | CL706537 | 210982 | BC032203 | cDNA sequence BC032203 | 17 | XM_140041 | 2193 | 65..3289 | CDS 0.66 | 5 | |
| S2-6H1 | CG425462 | 210982 | BC032203 | cDNA sequence BC032203 | 17 | XM_140041 | 2284 | 304..3528 | CDS 0.61 | 5 | |
| S2-6D1 | CG425459 | 245866 | BC037708 | cDNA sequence BC037708 | 2 | NM_172150 | 996 | 70..1350 | CDS 0.72 | 1 | |
| S21-12E1 | CL706441 | 224273 | BC043118 | cDNA sequence BC043118 | 16 | NM_174848 | 2208 | 402..3722 | CDS 0.54 | 1 | |
| S17-5A1 | CL610427 | 414758 | BC055757 | cDNA sequence BC055757 | 19 | NM_001001737 | 90 | 87..281 | CDS 0.02 | 1 | * |
| S22-6B1 | CL706517 | 234358 | D10627 | cDNA sequence D10627 | 8 | XM_486116 | 140 | 233..1462 | 5'UTR | 1 | |
| S8-4A1 | CG691670 | 347722 | Centg2 | centaurin, gamma 2 | UN | NM_178119 | 2697 | 581..3154 | CDS 0.82 | 3 | |
| S11-8C1 | CL266157 | 347722 | Centg2 | centaurin, gamma 2 | 1 | NM_178119 | 2935 | 581..3154 | CDS 0.91 | 3 | |
| S6-9E1 | CG784216 | 347722 | Centg2 | centaurin, gamma 2 | 1 | NM_178119 | 2711 | 581..3154 | CDS 0.83 | 3 | |
| S20-10E1 | CL706089 | 102545 | Cklfsf7 | chemokine-like factor super family 7 | 9 | NM_133978 | 163 | 28..531 | CDS 0.27 | 1 | |
| S4-3B1 | CG465941 | 12733 | Clcnk1 | chloride channel K1 | 4 | NM_024412 | 1682 | 60..2123 | CDS 0.79 | 1 | 1 |
| S3-7H1 | CG465896 | 12412 | Cbx1 | chromobox homolog 1 (Drosophila HP1 beta) | 11 | NM_007622 | 314 | 232..789 | CDS 0.15 | 1 | |
| S17-10D1 | CG691588 | 12419 | Cbx5 | chromobox homolog 5 (Drosophila HP1a) | 15 | NM_007626 | 23 | 67..642 | 5'UTR | 3 | |
| S16-5C1 | CL526271 | 12419 | Cbx5 | chromobox homolog 5 (Drosophila HP1a) | 15 | NM_007626 | 23 | 67..642 | 5'UTR | 3 | |
| S16-5E1 | CL526273 | 12419 | Cbx5 | chromobox homolog 5 (Drosophila HP1a) | 15 | NM_007626 | 23 | 67..642 | 5'UTR | 3 | |
| S3-8F1 | CG465901 | 52609 | Cbx7 | chromobox homolog 7 | 15 | NM_144811 | 2337 | 121..597 | 3'UTR | 1 | |
| S9-5E1 | CG899729 | 69634 | Clybl | citrate lyase beta like | 14 | NM_029556 | 64 | 6..1022 | CDS 0.06 | 1 | |
| S11-9C1 | CL266161 | 76707 | Clasp1 | CLIP associating protein 1 | 1 | XM_355227 | 1 | 1..4524 | 5'UTR | 2 | |
| S20-9D1 | CL706152 | 76707 | Clasp1 | CLIP associating protein 1 | 1 | XM_355227 | 1 | 1..4524 | 5'UTR | 2 | |
| S11-9H1 | CL266166 | 70625 | Crsp7 | cofactor required for Sp1 transcriptional activation, subunit 7, 70kDa | 8 | NM_027485 | 378 | 306..2072 | CDS 0.04 | 2 | |
| S4-12F1 | CG465928 | 70625 | Crsp7 | cofactor required for Sp1 transcriptional activation, subunit 7, 70kDa | 8 | NM_027485 | 378 | 306..2072 | CDS 0.04 | 2 | |
| S16-12F1 | CL526241 | 8030 | CCDC6 | coiled-coil domain containing 6 | 10 | NM_005436 | 274 | 127..1551 | CDS 0.10 | 1 | |
| S5-8G1 | CG691519 | 12675 | Chuk | conserved helix-loop-helix ubiquitous kinase | 19 | NM_007700 | 1568 | 54..2291 | CDS 0.68 | 1 | 2 |
| S11-9A1 | CL266159 | 66797 | Cntnap2 | contactin associated protein-like 2 | 6 | XM_358363 | 105 | 298..624 | 5'UTR | 1 | |
| S16-5D1 | CL526272 | 26572 | Cops3 | COP9 (constitutive photomorphogenic) homolog, subunit 3 (Arabidopsis) | 11 | NM_011991 | 1464 | 44..1315 | 3'UTR | 1 | |
| S1-5F1 | CG425371 | 26891 | Cops4 | COP9 (constitutive photomorphogenic) homolog, subunit 4 (Arabidopsis) | 5 | NM_012001 | 112 | 38..1258 | CDS 0.06 | 1 | |
| S15-6G1 | CL517187 | 12460 | Ccs | copper chaperone for superoxide dismutase | 19 | NM_016892 | 319 | 55..879 | CDS 0.39 | 1 | |
| S10-5A1 | CL256281 | 12396 | Cbfa2t2h | core-binding factor, runt domain, alpha subunit 2; translocated to, 2 homolog | 2 | NM_172860 | 120 | 86..1870 | CDS 0.02 | 1 | |
| S13-3B1 | CL458962 | 23837 | Cfdp | craniofacial development protein 1 | 8 | NM_011801 | 742 | 104..991 | CDS 0.72 | 4 | |
| S20-8E1 | CL706147 | 23837 | Cfdp | craniofacial development protein 1 | 8 | NM_011801 | 622 | 104..991 | CDS 0.58 | 4 | |
| S23-5F1 | CL706550 | 23837 | Cfdp | craniofacial development protein 1 | 8 | NM_011801 | 742 | 104..991 | CDS 0.72 | 4 | |
| S5-9A1 | CG691521 | 23837 | Cfdp | craniofacial development protein 1 | 8 | NM_011801 | 742 | 104..991 | CDS 0.72 | 4 | |
| S15-4D1 | CL517178 | 13017 | Ctbp2 | C-terminal binding protein 2 | 7 | XM_358372 | 209 | 415..1752 | 5'UTR | 2 | |
| S20-8F1 | CL706148 | 13017 | Ctbp2 | C-terminal binding protein 2 | 7 | XM_358372 | 209 | 415..1752 | 5'UTR | 2 | |
| S11-3F1 | CL266131 | 72584 | Cul4b | cullin 4B | X | NM_028288 | 59 | 74..2986 | 5'UTR | 2 | 1 |
| S17-12E1 | CG691602 | 72584 | Cul4b | cullin 4B | X | NM_028288 | 58 | 74..2986 | 5'UTR | 2 | |
| S9-6A1 | CG899733 | 244672 | Cwf19l2 | CWF19-like 2, cell cycle control (S. pombe) | 9 | NM_027545 | 1433 | 15..2678 | CDS 0.53 | 1 | |
| S12-11D1 | CL266175 | 67393 | Cxxc5 | CXXC finger 5 | 18 | NM_133687 | 1 | 16..969 | 5'UTR | 1 | 1 |
| S6-12B1 | CG784159 | 67393 | Cxxc5 | CXXC finger 5 | 18 | NM_133687 | 944 | 16..969 | CDS 0.97 | 1 | |
| S8-12E1 | CG691647 | 52463 | Cxxc6 | CXXC finger 6 | 10 | XM_125673 | 1289 | 1..7260 | CDS 0.18 | 2 | |
| S7-4D1 | CG784259 | 52463 | Cxxc6 | CXXC finger 6 | 10 | XM_125673 | 129 | 228..4004 | 5'UTR | 2 | |
| S10-4G1 | CL256279 | 12571 | Cdk6 | cyclin-dependent kinase 6 | 5 | NM_009873 | 14 | 56..1036 | 5'UTR | 1 | |
| S12-4A1 | CL266203 | 13056 | Cyb561 | cytochrome b-561 | 11 | NM_007805 | 39 | 52..804 | 5'UTR | 1 | |
| S18-10D1 | CL705946 | 66142 | Cox7b | cytochrome c oxidase subunit VIIb | X | NM_025379 | 4 | 83..325 | 5'UTR | 1 | |
| S21-7B1 | CL706482 | 109006 | Ciapin1 | cytokine induced apoptosis inhibitor 1 | 8 | NM_134141 | 52 | 81..1010 | 5'UTR | 1 | |
| S9-6D1 | CG899735 | 54394 | Crlf3 | cytokine receptor-like factor 3 | 11 | NM_018776 | 184 | 55..1383 | CDS 0.10 | 1 | |
| S3-12H1 | CG465858 | 74351 | Ddx23 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 | 15 | XM_128190 | 1 | 1414..2142 | 5'UTR | 1 | |
| S8-6C1 | CG691683 | 18130 | Ddx26 | DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26 | 14 | NM_008715 | 3445 | 694..5757 | CDS 0.54 | 1 | |
| S1-5H1 | CG425373 | 330662 | Dock1 | dedicator of cyto-kinesis 1 | 7 | XM_133890 | 140 | 163..2229 | 5'UTR | 1 | |
| S13-2D1 | CL458958 | 277133 | Dock5 | dedicator of cytokinesis 5 | 14 | BC016533 | 534 | 409..1047 | CDS 0.20 | 1 | |
| S1-2F1 | CG425349 | 50768 | Dlc1 | deleted in liver cancer 1 | 8 | NM_015802 | 323 | 285..3563 | CDS 0.01 | 1 | 1 |
| S14-11A1 | CL459651 | 13139 | Dgka | diacylglycerol kinase, alpha | 10 | NM_016811 | 262 | 334..2526 | 5'UTR | 1 | |
| S18-11B1 | CL705951 | 13383 | Dlgh1 | discs, large homolog 1 (Drosophila) | 16 | NM_007862 | 224 | 315..3098 | 5'UTR | 1 | |
| S5-8H1 | CG691520 | 227525 | Dclre1c | DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) | 2 | NM_146114 | 205 | 70..2187 | CDS 0.06 | 1 | |
| S7-8A1 | CG784277 | 13433 | Dnmt1: | DNA methyltransferase (cytosine-5) 1 | 9 | NM_010066 | 274 | 80..4942 | CDS 0.04 | 2 | |
| S10-2H1 | CL256268 | 13433 | Dnmt1 | DNA methyltransferase (cytosine-5) 1 | 9 | NM_010066 | 191 | 80..4942 | CDS 0.02 | 2 | |
| S17-9G1 | CG691633 | 52588 | D14Ertd226e | DNA segment, Chr 14, ERATO Doi 226, expressed | 14 | NM_145928 | 1704 | 50..862 | 3'UTR | 1 | |
| S21-8D1 | CL706491 | 223666 | D15Wsu169e | DNA segment, Chr 15, Wayne State University 169, expressed | 15 | NM_198420 | 161 | 248..3478 | 5'UTR | 1 | |
| S13-6D1 | CL458979 | 224647 | D17Wsu92e | DNA segment, Chr 17, Wayne State University 92, expressed | 17 | XM_128587 | 308 | 148..1023 | CDS 0.18 | 1 | |
| S5-7G1 | CG691513 | 52184 | D3Ertd250e | DNA segment, Chr 3, ERATO Doi 250, expressed | 3 | NM_025714 | 63 | 121..1890 | 5'UTR | 2 | |
| S6-3B1 | CG784178 | 52184 | D3Ertd250e | DNA segment, Chr 3, ERATO Doi 250, expressed | 3 | NM_025714 | 65 | 121..1890 | 5'UTR | 2 | |
| S17-3E1 | CG691614 | 209357 | D5Ertd679e | DNA segment, Chr 5, ERATO Doi 679, expressed | 5 | NM_181410 | 32 | 19..948 | CDS 0.01 | 1 | |
| S14-3B1 | CL459664 | 27999 | D6Wsu176e | DNA segment, Chr 6, Wayne State University 176, expressed | 6 | NM_138587 | 88 | 129..812 | 5'UTR | 1 | |
| S11-7G1 | CL266153 | 230935 | Dnajc11 | DnaJ (Hsp40) homolog, subfamily C, member 11 | 4 | NM_172704 | 98 | 26..1009 | CDS 0.07 | 1 | |
| S1-9B1 | CG425396 | 13195 | Ddc | dopa decarboxylase | 11 | NM_016672 | 451 | 13..1455 | CDS 0.30 | 1 | |
| S18-10A1 | CL705943 | 71972 | Dnmbp | dynamin binding protein | 19 | NM_028029 | 9 | 19..4761 | 5'UTR | 1 | |
| S4-6H1 | CG465965 | 13518 | Dst | dystonin | 1 | NM_010081 | 166 | 76..7911 | CDS 0.01 | 1 | |
| S8-6F1 | CG691685 | 13528 | Dtnb | dystrobrevin, beta | 12 | NM_007886 | 194 | 127..1974 | CDS 0.04 | 1 | |
| S19-10G1 | CL706021 | 242705 | E2f2 | E2F transcription factor 2 | 4 | NM_177733 | 753 | 389..1720 | CDS 0.27 | 1 | |
| S7-1G1 | CG784241 | 13709 | Elf1 | E74-like factor 1 | 14 | NM_007920 | 717 | 320..2158 | CDS 0.22 | 1 | |
| S5-10H1 | CG691462 | 112406 | Egln2 | EGL nine homolog 2 (C. elegans) | 7 | NM_053208 | 1596 | 272..1531 | 3'UTR | 1 | |
| S5-7C1 | CG691509 | 170439 | Elovl6 | ELOVL family member 6, elongation of long chain fatty | 3 | NM_130450 | 179 | 90..893 | CDS 0.11 | 2 | |
| S3-9E1 | CG465907 | 170439 | Elovl6 | ELOVL family member 6, elongation of long chain fatty acids (yeast) | 3 | NM_130450 | 179 | 90..893 | CDS 0.11 | 2 | |
| S9-6B1 | CG899734 | 13723 | Emb | embigin | 13 | NM_010330 | 419 | 219..1211 | CDS 0.20 | 1 | |
| S7-3B1 | CG784250 | 13800 | Enah | enabled homolog (Drosophila) | 1 | NM_010135 | 316 | 140..2548 | CDS 0.07 | 1 | |
| S12-5G1 | CL266214 | 230857 | Ece1 | endothelin converting enzyme 1 | 4 | NM_199307 | 172 | 172..2433 | 5'UTR | 1 | |
| S4-11H1 | CG465926 | 13836 | Epha2 | Eph receptor A2 | 4 | NM_010139 | 3533 | 114..3047 | 3'UTR | 1 | |
| S8-5A1 | CG691675 | 13860 | Eps8 | epidermal growth factor receptor pathway substrate 8 | 6 | NM_007945 | 225 | 246..2711 | 5'UTR | 2 | |
| S9-8B1 | CG899746 | 13860 | Eps8 | epidermal growth factor receptor pathway substrate 8 | 6 | NM_007945 | 226 | 246..2711 | 5'UTR | 2 | |
| S16-1G1 | CL526247 | 13850 | Ephx2 | epoxide hydrolase 2, cytoplasmic | 14 | NM_007940 | 165 | 64..1728 | CDS 0.06 | 1 | |
| S12-6H1 | CL266223 | 13821 | Epb4.1l1 | erythrocyte protein band 4.1-like 1 | 2 | NM_013510 | 206 | 220..2859 | 5'UTR | 1 | 1 |
| S23-3C1 | CL706533 | 13822 | Epb4.1l2 | erythrocyte protein band 4.1-like 2 | 10 | NM_013511 | 1 | 1..2967 | 5'UTR | 1 | 1 |
| S12-3C1 | CL266198 | 13824 | Epb4.1l4a | erythrocyte protein band 4.1-like 4a | 18 | NM_013512 | 308 | 52..1716 | CDS 0.15 | 1 | |
| S12-6G1 | CL266222 | 13829 | Epb4.9 | erythrocyte protein band 4.9 | 14 | NM_013514 | 269 | 421..1572 | 5'UTR | 1 | |
| S20-12E1 | CL706100 | 170942 | Erdr1 | erythroid differentiation regulator 1 | NA | NM_133362 | 668 | 234..767 | CDS 0.81 | 2 | |
| S7-2H1 | CG784248 | 170942 | Erdr1-pending | erythroid differentiation regulator 1 | NA | NM_133362 | 668 | 234..767 | CDS 0.81 | 2 | |
| S5-6H1 | CG691506 | 18612 | Etv4 | ets variant gene 4 (E1A enhancer binding protein, E1AF) | 11 | NM_008815 | 642 | 126..1793 | CDS 0.31 | 1 | |
| S20-11B1 | CL706091 | 104156 | Etv5 | ets variant gene 5 | 16 | NM_023794 | 3578 | 133..1665 | 3'UTR | 1 | |
| S21-5H1 | CL706474 | 77683 | Ehmt1 | euchromatic histone methyltransferase 1 | 2 | NM_172545 | 47 | 1163..3916 | 5'UTR | 1 | |
| S6-7H1 | CG784207 | 67204 | Eif2s2 | eukaryotic translation initiation factor 2, subunit 2 (beta) | 2 | NM_026030 | 72 | 79..1074 | 5'UTR | 1 | |
| S13-2C1 | CL458957 | 53356 | Eif3s4 | eukaryotic translation initiation factor 3, subunit 4 (delta) | 9 | NM_016876 | 104 | 28..990 | CDS 0.08 | 1 | |
| S9-6G1 | CG899738 | 26987 | Eif4el3 | eukaryotic translation initiation factor 4E like 3 | 1 | BC045153 | 686 | 21..758 | CDS 0.90 | 1 | |
| S21-5F1 | CL706472 | 14030 | Ewsr1 | Ewing sarcoma breakpoint region 1 | 11 | NM_007968 | 1802 | 57..2024 | CDS 0.89 | 1 | |
| S9-4B1 | CG899719 | 98238 | AA959742 | expressed sequence AA959742 | 11 | NM_133807 | 287 | 182..1105 | CDS 0.11 | 1 | |
| S17-10A1 | CG691584 | 101476 | AA960558 | expressed sequence AA960558 | 7 | NM_133942 | 2233 | 95..1165 | 3'UTR | 1 | * |
| S17-10A2 | CG691585 | 101476 | AA960558 | expressed sequence AA960558 | 7 | NM_133942 | 2233 | 95..1165 | 3'UTR | 1 | * |
| S20-8B1 | CL706145 | 241576 | AI194318 | expressed sequence AI194318 | 2 | NM_178886 | 146 | 34..1029 | CDS 0.11 | 1 | |
| S15-5B1 | CL517182 | 233875 | AI225782 | expressed sequence AI225782 | 7 | NM_153580 | 225 | 137..754 | CDS 0.14 | 1 | |
| S7-12H1 | CG784234 | 218341 | AI256775 | expressed sequence AI256775 | 13 | NM_178916 | 668 | 869..1174 | 5'UTR | 1 | |
| S17-11B1 | CG691592 | 381045 | AI413631 | expressed sequence AI413631 | 16 | NM_198645 | 787 | 403..837 | CDS 0.88 | 2 | |
| S21-2E1 | CL706454 | 381045 | AI413631 | expressed sequence AI413631 | 16 | NM_198645 | 727 | 403..837 | CDS 0.75 | 2 | |
| S23-4B1 | CL706539 | 101772 | AU040576 | expressed sequence AU040576 | 7 | NM_178642 | 183 | 1319..3103 | 5'UTR | 1 | 1 |
| S17-1E1 | CL610418 | 211896 | AV216087 | expressed sequence AV216087 | 2 | NM_144804 | 121 | 48..1583 | CDS 0.05 | 1 | |
| S3-12C1 | CG465854 | 235555 | AW107703 | expressed sequence AW107703 | 9 | XM_135158 | 217 | 1..2340 | CDS 0.09 | 1 | |
| S9-2B1 | CG899706 | 269400 | AW540478 | expressed sequence AW540478 | 2 | NM_001001882 | 73 | 223..3852 | 5'UTR | 1 | |
| S21-8B1 | CL706489 | 235047 | BB114266 | expressed sequence BB114266 | 9 | NM_172763 | 303 | 80..1144 | CDS 0.21 | 1 | |
| S6-4F1 | CG784186 | 380601 | C78212 | expressed sequence C78212 | 2 | NM_198176 | 217 | 389..2677 | 5'UTR | 1 | |
| S7-3E1 | CG784253 | 212632 | C79267 | expressed sequence C79267 | 4 | NM_183148 | 25 | 50..913 | 5'UTR | 1 | |
| S12-4D1 | CL266206 | 19777 | C80913 | expressed sequence C80913 | 7 | NM_011274 | 139 | 215..1588 | 5'UTR | 1 | |
| S21-1A1 | CL706445 | 211651 | Fancd2 | Fanconi anemia, complementation group D2 | 6 | XM_132796 | 48 | 80..4432 | 5'UTR | 1 | |
| S19-6B1 | CL706067 | 66587 | Fastk | Fas-activated serine/threonine kinase | 5 | NM_023229 | 797 | 86..1621 | CDS 0.46 | 1 | |
| S13-12G1 | CL458948 | 50789 | Fbxl3a | F-box and leucine-rich repeat protein 3a | 14 | NM_015822 | 359 | 360..1646 | 5'UTR | 1 | |
| S10-4E1 | CL256278 | 71999 | Fbxo22 | F-box only protein 22 | 9 | NM_028049 | 334 | 367..1266 | 5'UTR | 1 | |
| S10-7D1 | CL256293 | 66153 | Fbxo36 | F-box only protein 36 | 1 | NM_025386 | 328 | 33..599 | CDS 0.55 | 2 | |
| S23-2B1 | CL706527 | 66153 | Fbxo36 | F-box only protein 36 | 1 | NM_025386 | 129 | 33..599 | CDS 0.17 | 2 | |
| S18-3G1 | CL705979 | 14164 | Fgf1 | fibroblast growth factor 1 | 18 | NM_010197 | 155 | 189..656 | 5'UTR | 2 | |
| S2-12E1 | CG425427 | 14164 | Fgf1 | fibroblast growth factor 1 | 18 | NM_010197 | 155 | 189..656 | 5'UTR | 2 | |
| S20-5A1 | CL706128 | 14182 | Fgfr1 | fibroblast growth factor receptor 1 | 8 | NM_010206 | 149 | 58..2526 | CDS 0.04 | 2 | |
| S3-6C1 | CG465884 | 14182 | Fgfr1 | fibroblast growth factor receptor 1 | 8 | NM_010206 | 153 | 58..2526 | CDS 0.04 | 2 | |
| S12-10D1 | CL266168 | 56371 | Fzr1 | fizzy/cell division cycle 20 related 1 (Drosophila) | 10 | NM_019757 | 102 | 143..1624 | 5'UTR | 1 | |
| S23-6B1 | CL706552 | 23877 | Fiz1 | Flt3 interacting zinc finger protein 1 | 7 | NM_011813 | 149 | 179..1681 | 5'UTR | 1 | |
| S13-10G1 | CL458936 | 60611 | Foxj2 | forkhead box J2 | 6 | NM_021899 | 479 | 432..2129 | CDS 0.03 | 1 | 1 |
| S17-4A1 | CL610423 | 108655 | Foxp1 | forkhead box P1 | 6 | NM_053202 | 775 | 1..2118 | CDS 0.37 | 1 | |
| S15-4B1 | CL517176 | 224014 | Fgd4 | FYVE, RhoGEF and PH domain containing 4 | 16 | NM_139232 | 161 | 326..2626 | 5'UTR | 1 | |
| S7-11F1 | CG784228 | 56716 | Gbl-pending | G protein beta subunit-like | 17 | NM_019988 | 41 | 99..1079 | 5'UTR | 1 | |
| S21-10A1 | CL706423 | 14760 | Gpr19 | G protein-coupled receptor 19 | 6 | NM_008157 | 1 | 94..1323 | 5'UTR | 1 | |
| S18-4B1 | CL705982 | 93739 | Gabarapl2 | GABA(A) receptor-associated protein like 2 | 8 | NM_026693 | 362 | 99..452 | CDS 0.75 | 2 | |
| S10-1B1 | CL256256 | 93739 | Gabarapl2 | GABA(A) receptor-associated protein like 2 | 8 | NM_026693 | 362 | 99..452 | CDS 0.75 | 2 | |
| S21-2G1 | CL706455 | 14191 | Fgr | Gardner-Rasheed feline sarcoma viral (Fgr) oncogene homolog | 4 | NM_010208 | 210 | 220..1773 | 5'UTR | 1 | |
| S9-1B1 | CG899702 | 14607 | Gip | gastric inhibitory polypeptide | 11 | NM_008119 | 84 | 103..537 | 5'UTR | 1 | |
| S8-1A1 | CG691649 | 382620 | gene model 1184, (NCBI) | 12 | XM_356596 | 1 | 90..863 | 5'UTR | 1 | ||
| S17-6A1 | CL610431 | 381492 | LOC381492 | gene model 1655, (NCBI) | 3 | XM_358598 | 329 | 1..561 | CDS 0.59 | 1 | |
| S15-11H1 | CL517159 | NA | gene model 179, (NCBI) | gene model 179, (NCBI) | 8 | XM_134604 | 3198 | 1..4740 | CDS 0.67 | 2 | |
| S15-9A1 | CL517200 | NA | gene model 179, (NCBI) | gene model 179, (NCBI) | 8 | XM_134604 | 3198 | 1..4740 | CDS 0.67 | 2 | |
| S13-7H1 | CL458985 | 110012 | Gtrgeo22 | gene trap ROSA b-geo 22 | 10 | NM_148934 | 378 | 1..912 | CDS 0.41 | 2 | |
| S10-2G1 | CL256267 | 110012 | Gtrgeo22 | gene trap ROSA b-geo 22 | 10 | NM_148934 | 378 | 1..912 | CDS 0.41 | 2 | |
| S21-4E1 | CL706465 | 235459 | Gtf2a2 | general transcription factor II A, 2 | 9 | NM_199151 | 172 | 100..444 | CDS 0.21 | 1 | |
| S17-10G1 | CG691590 | 14886 | Gtf2i | general transcription factor II I | 5 | XM_489823 | 543 | 548..1492 | 5'UTR | 1 | |
| S18-8A1 | CL706008 | 14633 | Gli2 | GLI-Kruppel family member GLI2 | 1 | XM_136212 | 394 | 152..4786 | CDS 0.05 | 1 | |
| S4-6A1 | CG465958 | 170753 | Gig1-pending | glucocorticoid induced gene 1 | 3 | NM_133218 | 817 | 367..2067 | CDS 0.26 | 1 | |
| S20-9B1 | CW512050 | 14718 | Got1 | glutamate oxaloacetate transaminase 1, soluble | 19 | NM_010324 | 1306 | 55..1296 | 3'UTR | 1 | |
| S21-6G1 | CL706479 | 14775 | Gpx1 | glutathione peroxidase 1 | 9 | NM_008160 | 284 | 38..643 | CDS 0.41 | 1 | |
| S14-7G1 | CL459680 | 14571 | Gpd2 | glycerol phosphate dehydrogenase 2, mitochondrial | 2 | NM_010274 | 2056 | 289..2472 | CDS 0.81 | 1 | |
| S11-1E1 | CL266120 | 14594 | Ggta1 | glycoprotein galactosyltransferase alpha 1, 3 | 2 | NM_010283 | 440 | 445..1560 | 5'UTR | 1 | |
| S17-2B1 | CG691608 | 109801 | Glo1 | glyoxalase 1 | 17 | NM_025374 | 152 | 68..622 | CDS 0.15 | 1 | |
| S17-11H1 | CG691597 | 14455 | Gas5 | growth arrest specific 5 | 1 |