
Research interests and publications
Research interests:
Cell division control
in yeast.
Our focus is to understand how the commitment to the mitotic cell
cycle is regulated in response to environmental and internal cues,
as well as adversities such as DNA damage. The critical transitions
in the eukaryotic cell cycle are controlled by cyclin-dependent
kinases (CDKs). Both the structure and function of these CDKs
are so highly conserved that the first human CDKs were identified
by complementation of mutations in their fission yeast counterparts.
The molecular and genetic analysis of yeast continues to provide
crucial insights into how these complexes are regulated and what
they do. In budding yeast, as in all higher eukaryotes, the decision
to commit to another division cycle occurs in G1. Nine cyclins
have been identified that bind and activate a single CDK, and
three of these cyclins (Cln1,2 and 3) play critical roles in modulating
the decision to exit from G1 and begin another cell cycle. We
are studying what controls the expression of these three G1 cyclins
and other critical cell cycle regulators that are specifically
expressed during G1.
There are two consecutive waves of transcription that occur
during G1. The first occurs at the M/G1 boundary and we have defined
a new promoter element, the ECB, which activates transcription
of CLN3 and other key cell cycle regulators at this time. The
second wave of transcription is conferred by at least two other
promoter elements (SCBs and MCBs), which are activated near the
G1/S boundary to induce the expression of CLN1, CLN2 and dozens
of other genes that are required for DNA replication and cell
wall synthesis. Our goal is to understand how internal and external
signals modulate the activity of these transcription complexes
and control the timing of the transition to S phase.
Another adaptive feature of the cell cycle in all cells is
a set of surveillance mechanisms which delay the cycle when damage
occurs. In the case of DNA damage, cells are able to delay in
G1, S and/or G2 in order for repair to take place. DNA damage
induces a kinase cascade which phosphorylates substrates responsible
for the arrest of the cell cycle and the repair. Mutations in
the genes in this checkpoint pathway prevent the delay and lead
to an increased sensitivity to DNA damage in yeast and humans.
We are also investigating the mechanism by which these kinases
arrest the cell cycle in G1. Our recent work suggests that the
damage-dependent delay of cells in G1 may involve down-regulation
of G1 cyclin expression by both transcriptional and post-transcriptional
mechanisms.
Publications: (Click
on authors to see abstract)
Mai
B, Breeden LL:
CLN1 and its repression by Xbp1 are
important for efficient sporulation in budding yeast. Mol. Cell.
Biol. 2000 Jan;20(2): 478-487.
Sidorova
J, Breeden LL:
The MSN1 and NHP6A genes suppress SWI6 defects in Saccharomyces
cerevisiae.
Genetics. 1999 Jan;151(1):45-55.
Ewaskow
SP, Sidorova JM, Hendle J, Emery JC, Lycan DE, Zhang KY, Breeden
LL:
Mutation and modeling analysis of the Saccharomyces cerevisiae
Swi6 ankyrin repeats.
Biochemistry. 1998 Mar 31;37(13):4437-50.
Sidorova
JM, Breeden LL:
Rad53-dependent phosphorylation of Swi6 and down-regulation of
CLN1 and CLN2 transcription occur in response to DNA damage in
Saccharomyces cerevisiae.
Genes Dev. 1997 Nov 15;11(22):3032-45.
Mai B,
Breeden LL:
Xbp1, a stress-induced transcriptional repressor of the Saccharomyces
cerevisiae Swi4/Mbp1 family.
Mol Cell Biol. 1997 Nov;17(11):6491-501.
McInerny
CJ,Partridge JF, Mikesell GE, Creemer DP, Breeden LL:
A novel Mcm1-dependent element in the SWI4, CLN3, CDC6, and CDC47
promoters activates M/G1-specific transcription.
Genes Dev. 1997 May 15;11(10):1277-88.
Partridge
JF, Mikesell GE, Breeden LL.:
Cell cycle-dependent transcription of CLN1 involves swi4 binding
to MCB-like elements.
J Biol Chem. 1997 Apr 4;272(14):9071-7.
Breeden L.
Alpha-factor synchronization of budding yeast.
Methods Enzymol. 1997;283:332-41.
Lycan
DE, Stafford KA, Bollinger W, Breeden LL:
A new Saccharomyces cerevisiae ankyrin repeat-encoding gene required
for a normal rate of cell proliferation.
Gene. 1996 May 24;171(1):33-40.
Breeden L.
Start-specific transcription in yeast.
Curr Top Microbiol Immunol. 1996;208:95-127. Review. No abstract
available.
Sidorova
JM, Mikesell GE, Breeden LL:
Cell cycle-regulated phosphorylation of Swi6 controls its nuclear
localization.
Mol Biol Cell. 1995 Dec;6(12):1641-58.
Breeden
L,Mikesell G:
Three independent forms of regulation affect expression of HO,
CLN1 and CLN2 during the cell cycle of Saccharomyces cerevisiae.
Genetics. 1994 Dec;138(4):1015-24.
Lycan
D, Mikesell G, Bunger M, Breeden L:
Differential effects of Cdc68 on cell cycle-regulated promoters
in Saccharomyces cerevisiae.
Mol Cell Biol. 1994 Nov;14(11):7455-65.
Foster
R, Mikesell GE, Breeden L:
Multiple SW16-dependent cis-acting elements control SWI4 transcription
through the cell cycle.
Mol Cell Biol. 1993 Jun;13(6):3792-801.
Sidorova
J, Breeden LL:
Analysis of the SW14/SW16 protein complex, which directs G1/S-specific
transcription in Saccharomyces cerevisiae.
Mol Cell Biol. 1993 Feb;13(2):1069-77.
Lowndes
NF, Johnson AL, Breeden L, Johnston LH:
SWI6 protein is required for transcription of the periodically
expressed DNA synthesis genes in budding yeast.
Nature. 1992 Jun 11;357(6378):505-8.
Breeden
L, Mikesell GE:
Cell cycle-specific expression of the SWI4 transcription factor
is required for the cell cycle regulation of HO transcription.
Genes Dev. 1991 Jul;5(7):1183-90.
Breeden L.
Cell cycle-regulated promoters in budding yeast.
Trends Genet. 1988 Sep;4(9):249-53. Review. No abstract available.
Breeden
L, Nasmyth K:
Similarity between cell-cycle genes of budding yeast and fission
yeast and the Notch gene of Drosophila.
Nature. 1987 Oct 15-21;329(6140):651-4.
Breeden
L, Nasmyth K:
Cell cycle control of the yeast HO gene: cis- and trans-acting
regulators.
Cell. 1987 Feb 13;48(3):389-97.
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Last update:
8/18/01 |