Resources
Array Files
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GEO: http://www.ncbi.nlm.nih.gov/geo/ |
Array data normalization
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Bioconductor: http://www.bioconductor.org/ |
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RMA express: http://stat-www.berkeley.edu/~bolstad/RMAExpress/RMAExpress.html |
Array Analysis
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Affymetrix: http://www.affymetrix.com/index.affx |
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dCHIP: http://biosun1.harvard.edu/complab/dchip/ |
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SAM: http://www-stat.stanford.edu/~tibs/SAM/index.html |
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GeneSpring: http://www.chem.agilent.com/scripts/pds.asp?lpage=27881 |
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Stanford Genomic Resources: http://genome-www.stanford.edu/ |
Pathways Analysis
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Biocarta: http://www.biocarta.com/genes/index.asp |
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GenMapp: http://www.genmapp.org/ |
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Gene Ontology: http://www.geneontology.org/ |
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Ingenuity: http://www.ingenuity.com/ |
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Kegg: http://www.genome.ad.jp/kegg/pathway.html |
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Medminer: http://discover.nci.nih.gov/textmining/main.jsp |
Resources for gene and protein investigations
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Genome Browser: http://genome.ucsc.edu/ |
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Aceview: http://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/index.html |
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Entrez Gene: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd |
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ExPASy: http://us.expasy.org/sprot/ |
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Genecards: http://www.genecards.org/ |
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HUGO: http://www.gene.ucl.ac.uk/nomenclature/ |
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OMIM: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=OMIM |
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Blast: http://www.ncbi.nlm.nih.gov/BLAST/ |
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DSMZ — Human and animal cell lines: http://www.dsmz.de/human_and_animal_cell_lines/main.php?menu_id=2 |
